Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs16827863 chr2:232077670 C/T 0.000127 494 30.7 29.4 31.93 KM Plot
PRAD rs1684885 chr3:169958552 A/G 0.000189 494 26.4 31.23 31.07 KM Plot
PRAD rs16850362 chr1:202699532 G/T 1.02E-5 491 30.8 30.95 27.92 KM Plot
PRAD rs16850379 chr2:235001537 C/T 0.000177 489 32.27 28.57 28.77 KM Plot
PRAD rs16850380 chr2:235002241 C/T 0.00013 494 32.27 28.3 29.23 KM Plot
PRAD rs16870018 chr8:104078514 T/C 1.18E-8 488 31.07 28.07 25.67 KM Plot
PRAD rs16906145 chr9:22455714 T/G 7.38E-5 481 31.33 28.48 17.47 KM Plot
PRAD rs16918955 chr8:54163895 C/T 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs16919966 chr11:6945451 C/T 4.89E-8 494 31.23 28.48 28.57 KM Plot
PRAD rs16959637 chr16:58047773 G/A 2.2E-5 485 30.8 31.37 44.3 KM Plot
PRAD rs16959641 chr16:58054099 C/G 2.34E-5 482 30.8 31.22 44.3 KM Plot
PRAD rs16975402 chr18:39468269 C/T 6.05E-8 494 29.63 35.95 29 KM Plot
PRAD rs16975407 chr18:39479441 C/G 0.000133 480 29.1 36.6 24.63 KM Plot
PRAD rs17014331 chr3:24241978 A/G 2.49E-6 494 24.58 28.8 31.27 KM Plot
PRAD rs17033329 chr2:107439757 G/A 1.38E-5 491 30.93 30.7 32.63 KM Plot